CATS-rb

Troubleshooting

Please report all potential bugs in the Issues tracker.

Singularity

If you run into Singularity errors involving the default TMPDIR environment variable, set TMPDIR to your current working directory so the container uses a writable location for temporary files:

TMPDR=$(pwd)

Conda installation

In case of dependency conflicts, try setting the following channel priority:

conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict

If this does not work, try setting channel priority to flexible:

conda config --set channel_priority flexible

If installation fails on ARM64 Mac architecture (Apple Silicon), try creating a new environment emulating the x86_64 architecture:

CONDA_SUBDIR=osx-64 conda create -n cats_rb -c conda-forge -c bioconda -c defaults r-base=4.3 cats-rb